Inhibition of Murine Cytomegalovirus Infection in Animals by RNase P-Associated External Guide Sequences.

External guide sequence (EGS) RNAs are associated with ribonuclease P (RNase P), a tRNA processing enzyme, and represent promising agents for gene-targeting applications as they can direct RNase-P-mediated cleavage of a target mRNA. Using murine cytomegalovirus (MCMV) as a model system, we examined the antiviral effects of an EGS variant, which was engineered using in vitro selection procedures. EGSs were used to target the shared mRNA region of MCMV capsid scaffolding protein (mCSP) and assemblin. In vitro, the EGS variant was 60 times more active in directing RNase P cleavage of the target mRNA than the EGS originating from a natural tRNA. In MCMV-infected cells, the variant reduced mCSP expression by 92% and inhibited viral growth by 8,000-fold. In MCMV-infected mice hydrodynamically transfected with EGS-expressing constructs, the EGS variant was more effective in reducing mCSP expression, decreasing viral production, and enhancing animal survival than the EGS originating from a natural tRNA. These results provide direct evidence that engineered EGS variants with higher targeting activity in vitro are also more effective in reducing gene expression in animals. Furthermore, our findings imply the possibility of engineering potent EGS variants for therapy of viral infections

Artificial Intelligence in Civil Engineering

Artificial intelligence is a branch of computer science, involved in the research, design, and application of intelligent computer. Traditional methods for modeling and optimizing complex structure systems require huge amounts of computing resources, and artificial-intelligence-based solutions can often provide valuable alternatives for efficiently solving problems in the civil engineering. This paper summarizes recently developed methods and theories in the developing direction for applications of artificial intelligence in civil engineering, including evolutionary computation, neural networks, fuzzy systems, expert system, reasoning, classification, and learning, as well as others like chaos theory, cuckoo search, firefly algorithm, knowledge-based engineering, and simulated annealing. The main research trends are also pointed out in the end. The paper provides an overview of the advances of artificial intelligence applied in civil engineering

Slope Position Rather Than Thinning Intensity Affects Arbuscular Mycorrhizal Fungi (AMF) Community in Chinese Fir Plantations

Background and Objectives: Arbuscular mycorrhizal fungi (AMF) play a crucial role in individual plant capability and whole ecosystem sustainability. Chinese fir, one of the most widely planted tree species in southern China, forms associations with AMF. However, it is still unclear what impacts thinning management applied to Chinese fir plantations has on the structure and diversity of soil AMF communities. This research attempts to bridge this knowledge gap. Materials and Methods: A thinning experiment was designed on different slope positions in Chinese fir plantations to examine the impacts of slope position and thinning intensity on colonization, diversity, and community composition of AMF. Results: Our research showed that the altitudinal slope position had significant effects on colonization, diversity, and community composition of AMF in Chinese fir plantations. In addition, the interaction between slope position and thinning intensity had significant effects on AMF diversity. Colonization by AMF on the lower slope position was significantly higher than on the upper slope position, while AMF diversity on the upper slope position was higher than on the middle and lower slope positions. Glomus was the most abundant genus in all slope positions, especially on the middle and lower slope positions. The relative abundance of Diversispora was significantly different among slope positions with absolute dominance on the upper slope position. Scutellospora was uniquely found on the upper slope position. Furthermore, soil Mg and Mn contents and soil temperature positively affected AMF community composition at the operational taxonomic unit (OTU) level. Conclusions: These findings suggested that slope position should be considered in the management of Chinese fir plantations. Furthermore, both chemical fertilization and AMF augmentation should be undertaken on upper hill slope positions as part of sustainable management practices for Chinese fir plantations

A permutation-combination heuristics for crane-based automated storage and retrieval systems considering order fulfillment time and energy consumption

An automated storage and retrieval system (AS/RS) is a key component of enterprise logistics. Its performance metrics include, e.g., order fulfillment time and energy consumption. A crane-based automated storage and retrieval system (CB-AS/RS) is used as the study subject in this paper to build a location allocation model with the goal of minimizing order fulfillment time and minimizing energy consumption. The two-objective problem is transformed into a single-objective problem by the weight method. A genetic algorithm (GA) is used to optimize and simulate the model using spatial mapping coding. A permutation-combination heuristics (PCH) is proposed that follows the coding method and cross-operation of the GA and conducts both arrange-operation and change-operation. During the simulation, the influence of different storage utilization rates and different output and input instruction quantities in a batch of orders on the results is considered. Experimental results show that the results of the PCH algorithm are better than the GA and the optimization results are more stable. In this paper, we provide an optimization idea for the CB-AS/RS researchers and managers

Critical role of the coupling between the octahedral rotation and A-site ionic displacements in PbZrO3-based antiferroelectric materials investigated by in situ neutron diffraction

This in situ neutron-diffraction study on antiferroelectric (AFE) Pb0.99(Nb0.02Zr0.65Sn0.28Ti0.05)O3 polycrystalline materials describes systematic structural and associated preferred orientation changes as a function of applied electric field and temperature. It is found that the pristine AFE phase can be poled into the metastable ferroelectric (FE) phase at room temperature. At this stage, both AFE and FE phases consist of modes associated with octahedral rotation and A-site ionic displacements. The temperature-induced phase transition indicates that the octahedral rotation and ionic displacements are weakly coupled in the room-temperature FE phase and decoupled in the high-temperature FE phase. However, both temperature and E-field-induced phase transitions between the AFE and high-temperature FE phase demonstrate the critical role of coupling between octahedral rotation and A-site ionic displacements in stabilizing the AFE structure, which provides not only experimental evidence to support previous theoretical calculations, but also an insight into the design and development of AFE materials. Moreover, the associated preferred orientation evolution in both AFE and FE phases is studied during the phase transitions. It is found that the formation of the preferred orientation can be controlled to tune the samples’ FE and AFE properties.T.L., Y.L., and R.L.W. thank the Australian Research Council (ARC DP160104780) for financial support in the form of a joint ARC Discovery Project. Y.L. also acknowledges the ARC’s support in the form of an ARC Future Fellowship. The authors also thank the Australian Nuclear Science and Technology Organisation for support in the form of beam time

Several Critical Cell Types, Tissues, and Pathways Are Implicated in Genome-Wide Association Studies for Systemic Lupus Erythematosus

We aimed to elucidate the cell types, tissues, and pathways influenced by common variants in systemic lupus erythematosus (SLE). We applied a nonparameter enrichment statistical approach, termed SNPsea, in 181 single nucleotide polymorphisms (SNPs) that have been identified to be associated with the risk of SLE through genome-wide association studies (GWAS) in Eastern Asian and Caucasian populations, to manipulate the critical cell types, tissues, and pathways. In the two most significant cells’ findings (B lymphocytes and CD14+ monocytes), we subjected the GWAS association evidence in the Han Chinese population to an enrichment test of expression quantitative trait locus (QTL) sites and DNase I hypersensitivity, respectively. In both Eastern Asian and Caucasian populations, we observed that the expression level of SLE GWAS implicated genes was significantly elevated in xeroderma pigentosum B cells (P ≤ 1.00 × 10−6), CD14+ monocytes (P ≤ 2.74 × 10−4) and CD19+ B cells (P ≤ 2.00 × 10−6), and plasmacytoid dendritic cells (pDCs) (P ≤ 9.00 × 10−6). We revealed that the SLE GWAS-associated variants were more likely to reside in expression QTL in B lymphocytes (q1/q0 = 2.15, P = 1.23 × 10−44) and DNase I hypersensitivity sites (DHSs) in CD14+ monocytes (q1/q0 = 1.41, P = 0.08). We observed the common variants affected the risk of SLE mostly through by regulating multiple immune system processes and immune response signaling. This study sheds light on several immune cells and responses, as well as the regulatory effect of common variants in the pathogenesis of SLE